PDBsum entry 1mn2

Tunnel analysis for: 1mn2 calculated with

MOLE 2.0

PDB id

1mn2

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

1.37

28.8

0.84

0.11

4.8

81

1

1

3

8

2

0

0

HEM 396 A

2

1.76

2.58

30.8

-1.72

-0.44

21.8

81

3

3

3

3

1

0

0

HEM 396 A

3

1.33

1.34

30.8

-1.57

-0.43

21.5

83

3

3

3

3

1

0

0

HEM 396 A

4

1.98

3.50

34.1

-0.43

-0.08

13.7

78

3

1

4

5

1

2

0

HEM 396 A

5

1.76

2.68

37.6

-1.86

-0.40

22.3

86

5

2

4

4

1

0

0

HEM 396 A

6

1.43

3.02

38.9

-1.59

-0.40

19.5

80

5

2

4

4

1

1

1

HEM 396 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.