PDBsum entry 1mko

Pore analysis for: 1mko calculated with

MOLE 2.0

PDB id

1mko

Pores calculated on whole structure

Pores calculated excluding ligands

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10 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.85

1.85

29.4

-1.15

-0.24

12.8

78

3

4

1

2

3

1

0

2

1.19

1.19

38.4

-1.43

-0.31

21.6

81

6

1

2

3

1

1

0

3

1.65

1.83

46.8

-1.85

-0.22

14.9

78

7

4

3

2

6

3

0

4

1.62

1.83

60.9

-1.91

-0.28

22.1

77

8

3

2

4

5

4

0

PO4 902 A

5

2.30

2.44

61.0

-1.98

-0.24

20.8

75

8

4

1

4

3

6

0

PO4 902 A

6

1.39

1.58

61.1

-2.29

-0.22

24.5

83

9

2

4

3

4

2

0

7

1.99

2.14

64.1

-1.93

-0.30

20.9

79

10

5

1

4

3

6

0

PO4 903 C

8

1.65

1.85

65.8

-1.75

-0.33

21.7

80

10

4

2

4

5

4

0

PO4 903 C

9

1.39

1.58

74.5

-2.43

-0.26

28.5

80

11

3

2

5

1

5

0

PO4 902 A

10

1.39

1.58

75.5

-2.29

-0.31

27.8

82

12

3

2

5

1

5

0

PO4 903 C

11

1.27

1.26

130.7

0.47

0.31

13.3

76

6

5

3

19

5

3

0

HEM 143 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.