PDBsum entry 1mk3 Go to PDB code:  Pore analysis for: 1mk3 calculated with MOLE 2.0 PDB id 1mk3 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.81 4.20 36.5 -2.37 -0.54 18.9 77 4 2 1 1 1 1 0   2 1.28 2.14 38.8 0.34 0.30 12.5 77 2 2 2 7 4 0 0   3 1.62 1.84 42.9 0.06 0.07 15.6 78 1 2 2 5 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.