PDBsum entry 1mjt

Pore analysis for: 1mjt calculated with

MOLE 2.0

PDB id

1mjt

Pores calculated on whole structure

Pores calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 pore, coloured by radius

9 pores, coloured by radius

9 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.10

2.10

49.0

-1.27

0.01

17.5

74

5

2

4

5

5

1

1

HEM 500 A NAD 700 A ITU 800 A

2

1.23

2.72

54.8

-0.71

0.07

10.8

76

4

2

4

5

5

0

1

NAD 701 A HEM 501 B ITU 801 B

3

1.20

2.71

63.6

-0.34

0.13

8.3

69

3

2

2

8

9

4

2

HEM 500 A NAD 701 A ITU 800 A HEM 501 B

4

1.23

1.27

75.6

-1.09

0.13

12.2

65

5

2

3

5

11

4

1

NAD 700 A NAD 701 A HEM 501 B

5

1.92

2.39

75.4

-0.65

0.04

20.2

76

6

2

1

4

3

1

0

6

1.20

1.22

79.7

-1.00

0.08

11.1

72

5

3

5

7

9

4

1

HEM 500 A NAD 701 A HEM 501 B

7

1.24

1.26

91.8

-1.76

0.03

14.9

70

8

3

6

4

11

4

0

NAD 700 A NAD 701 A HEM 501 B

8

1.19

2.61

118.5

-0.54

0.21

11.4

71

8

2

2

9

9

4

1

HEM 500 A NAD 701 A FRU 2 C

9

1.25

1.24

130.6

-1.12

0.19

14.4

69

11

2

3

6

11

4

0

NAD 700 A NAD 701 A FRU 2 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.