spacer
spacer

PDBsum entry 1mf2

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 1mf2 calculated with MOLE 2.0 PDB id
1mf2
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.65 2.32 37.0 -1.23 -0.50 16.5 79 2 1 2 3 1 2 0  
2 2.73 3.43 56.1 -1.65 -0.76 13.7 85 2 5 7 0 1 3 0  
3 2.70 3.42 56.4 -1.59 -0.79 12.3 87 1 5 8 0 1 3 0  
4 2.73 3.40 58.1 -1.55 -0.76 12.3 85 2 5 7 0 1 3 0  
5 2.70 3.48 58.5 -1.96 -0.88 13.6 97 2 6 15 0 0 0 0  
6 2.69 3.41 60.8 -1.57 -0.77 10.4 89 1 5 10 1 1 3 0  
7 3.94 4.87 61.6 -1.20 -0.65 9.7 77 1 4 4 0 2 6 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer