PDBsum entry 1mdu Go to PDB code:  Pore analysis for: 1mdu calculated with MOLE 2.0 PDB id 1mdu Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 pore, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.17 2.20 25.1 -1.44 -0.52 15.9 85 2 4 3 3 1 0 0  TRS 472 A 2 1.40 1.74 28.9 -2.20 -0.30 25.9 80 3 0 2 0 2 0 0   3 1.10 1.31 52.8 -0.88 -0.37 16.2 84 7 4 2 5 0 1 0  HIC 75 E ATP 400 E CA 401 E 4 1.24 1.26 28.3 -0.45 -0.27 15.3 86 4 4 2 4 0 0 0  HIC 75 B ATP 400 B CA 401 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.