PDBsum entry 1mcd Go to PDB code:  Pore analysis for: 1mcd calculated with MOLE 2.0 PDB id 1mcd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.84 3.17 27.8 -1.09 -0.63 11.8 86 4 0 1 2 0 2 0   2 1.87 1.87 29.5 -0.29 -0.03 9.3 71 2 2 2 2 7 1 0  ACE 0 P DPN 1 P BAL 2 P 3 1.50 1.79 28.8 -1.42 -0.46 22.4 82 3 3 2 3 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.