PDBsum entry 1mcd Go to PDB code:  Tunnel analysis for: 1mcd calculated with MOLE 2.0 PDB id 1mcd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.35 31.4 0.17 -0.37 3.7 88 0 1 4 6 2 0 0   2 1.29 1.36 31.6 -1.16 -0.71 12.4 94 2 2 5 1 1 0 0   3 1.29 1.37 42.2 -1.03 -0.65 10.8 88 3 1 3 2 1 1 0   4 1.52 1.52 15.1 -0.83 -0.54 12.8 75 1 1 2 1 1 2 0   5 1.40 1.57 22.2 -0.69 -0.39 11.7 78 0 2 1 2 2 1 0   6 1.41 1.57 24.7 -1.20 -0.54 11.1 79 0 2 3 0 2 1 0   7 1.41 1.57 32.6 -1.39 -0.48 19.7 79 2 3 1 2 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.