PDBsum entry 1m3d Go to PDB code:  Pore analysis for: 1m3d calculated with MOLE 2.0 PDB id 1m3d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.07 1.78 26.3 -1.01 -0.47 12.4 82 2 1 3 3 0 0 0   2 1.11 1.21 108.0 -1.46 -0.32 24.1 85 13 15 6 12 4 1 0  LU 2004 L 3 1.18 1.18 109.6 -1.33 -0.27 23.9 84 14 15 5 13 4 1 0  LU 2004 L 4 1.21 1.28 128.8 -1.56 -0.43 22.9 84 15 17 8 12 2 3 0  LU 2002 F 5 1.36 1.40 145.2 -1.42 -0.30 24.0 83 16 16 6 15 4 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.