 |
PDBsum entry 1lxm
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1lxm calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1lxm
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
6 pores,
coloured by radius |
|
7 pores,
coloured by radius
|
7 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
3.98 |
6.84 |
25.4 |
-2.15 |
0.12 |
20.6 |
79 |
|
6 |
0 |
2 |
3 |
3 |
0 |
0 |
|
NAG 1 B BDP 2 B NAG 3 B BDP 4 B NAG 5 B
|
 |
|
2 |
 |
3.97 |
6.79 |
26.6 |
-2.22 |
0.06 |
16.8 |
82 |
5 |
0 |
4 |
2 |
3 |
0 |
0 |
NAG 1 B BDP 2 B NAG 3 B BDP 4 B
|
|
3 |
 |
1.63 |
1.73 |
29.5 |
-3.24 |
-0.59 |
36.9 |
83 |
8 |
3 |
2 |
1 |
0 |
0 |
0 |
BDP 4 B NAG 5 B BDP 6 B
|
|
4 |
 |
1.63 |
1.72 |
29.7 |
-2.59 |
-0.07 |
27.3 |
80 |
9 |
3 |
4 |
2 |
3 |
0 |
0 |
NAG 1 B BDP 2 B NAG 3 B BDP 4 B NAG 5 B BDP 6 B
|
|
5 |
 |
1.22 |
1.41 |
45.8 |
-1.08 |
-0.11 |
21.5 |
84 |
5 |
4 |
2 |
7 |
1 |
0 |
0 |
NAG 5 B
|
|
6 |
 |
1.60 |
1.76 |
79.4 |
-2.32 |
-0.39 |
19.3 |
85 |
7 |
1 |
8 |
2 |
2 |
1 |
0 |
NAG 3 B BDP 4 B NAG 5 B
|
 |
7 |
 |
1.85 |
1.85 |
113.0 |
-1.10 |
-0.29 |
16.6 |
84 |
8 |
3 |
6 |
8 |
3 |
0 |
0 |
NAG 1 B BDP 2 B
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program