spacer
spacer

PDBsum entry 1ltl

Go to PDB code: 
Top Page protein metals Protein-protein interface(s) pores links
Pore analysis for: 1ltl calculated with MOLE 2.0 PDB id
1ltl
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
13 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.55 2.60 25.2 -1.71 -0.66 23.9 78 4 6 0 1 0 1 0  
2 2.21 2.98 32.9 -1.12 -0.12 16.0 80 5 3 3 3 2 1 0  
3 1.64 1.81 41.9 -2.76 -0.60 39.8 80 4 7 0 1 1 0 0  
4 2.42 3.08 47.3 -1.23 -0.37 18.1 80 6 6 3 3 2 1 0  
5 2.22 2.90 48.4 -1.69 -0.37 23.6 88 6 3 3 2 1 1 0  
6 3.16 3.44 54.3 -2.61 -0.73 28.6 84 3 5 3 0 1 1 0  
7 2.39 2.96 29.7 -2.77 -0.73 27.1 82 2 4 3 0 0 3 0  
8 2.63 3.96 44.4 -1.58 -0.39 20.3 81 5 4 3 3 2 1 0  
9 2.07 2.08 49.3 -1.43 -0.39 25.2 87 6 7 2 3 1 0 0  
10 2.39 2.96 75.8 -2.55 -0.68 28.6 79 5 8 4 0 1 3 0  
11 2.64 4.09 87.0 -1.81 -0.48 19.9 82 8 6 7 2 3 2 0  
12 2.21 3.56 107.4 -1.72 -0.45 19.4 83 8 8 7 4 4 3 0  
13 3.00 3.18 30.1 -2.96 -0.66 36.4 82 4 5 2 1 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer