PDBsum entry 1lpy Go to PDB code:  Tunnel analysis for: 1lpy calculated with MOLE 2.0 PDB id 1lpy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 2.80 18.9 -1.02 0.18 12.2 76 3 0 2 1 2 0 0  MSE 102 A MSE 103 A MSE 106 A MSE 111 A 2 1.34 2.63 23.2 0.11 -0.11 4.0 80 1 1 2 3 2 0 0  MSE 84 A MSE 99 A MSE 102 A MSE 103 A MSE 106 A MSE 111 A 3 1.35 2.75 23.6 -0.03 0.12 5.1 79 2 0 3 3 3 0 0  MSE 84 A MSE 87 A MSE 99 A MSE 102 A MSE 103 A MS E 106 A MSE 111 A MSE 118 A 4 1.34 2.77 27.2 0.71 0.36 4.0 83 2 0 2 6 3 0 0  MSE 84 A MSE 99 A MSE 100 A MSE 102 A MSE 103 A MSE 106 A MSE 111 A BME 170 A 5 1.34 2.62 28.1 -1.09 0.05 12.9 78 3 0 2 1 2 0 0  MSE 102 A MSE 103 A MSE 106 A MSE 111 A 6 1.35 2.73 32.9 -0.12 0.06 5.1 76 2 0 3 2 3 1 0  MSE 84 A MSE 87 A MSE 99 A MSE 102 A MSE 103 A MS E 106 A MSE 111 A MSE 118 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.