PDBsum entry 1l2f Go to PDB code:  Tunnel analysis for: 1l2f calculated with MOLE 2.0 PDB id 1l2f Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.89 17.9 3.15 1.01 3.1 89 1 0 0 6 0 0 1  MSE 208 A 2 1.15 1.36 19.4 1.66 0.38 6.6 86 1 1 0 5 0 0 1  MSE 208 A 3 1.22 2.80 20.1 1.09 0.41 6.5 87 1 0 2 4 2 0 0   4 1.04 2.77 23.5 1.66 0.61 5.0 85 1 0 2 6 2 0 0   5 1.31 1.42 18.3 0.02 -0.20 11.0 86 3 1 0 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.