PDBsum entry 1kqp Go to PDB code:  Tunnel analysis for: 1kqp calculated with MOLE 2.0 PDB id 1kqp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.41 2.59 32.7 -1.85 -0.74 17.4 84 3 4 4 2 1 0 0  ADJ 3001 A 2 1.34 1.53 32.9 -0.57 -0.29 14.6 78 2 3 2 5 2 1 0  ADJ 3001 A EDO 2009 B 3 1.48 1.72 34.5 -1.73 -0.70 17.0 82 2 3 4 2 1 1 0  ADJ 3001 A 4 1.50 1.73 36.7 -1.40 -0.65 15.1 79 2 5 3 3 1 1 0  ADJ 3001 A POP 4001 A MG 5001 A MG 5002 A 5 1.51 1.73 37.3 -0.49 -0.19 14.0 83 4 2 3 5 3 0 0  ADJ 3001 A 6 1.32 1.61 53.0 -0.71 -0.08 10.8 73 2 3 1 6 5 2 0  ADJ 3001 A ADJ 3002 B 7 1.26 1.49 68.5 -0.91 -0.32 12.6 76 2 8 3 6 5 3 0  EDO 2008 A ADJ 3001 A ADJ 3002 B POP 4002 B MG 5003 B MG 5004 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.