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PDBsum entry 1kog
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Pore analysis for: 1kog calculated with MOLE 2.0 PDB id
1kog
Pores calculated on whole structure Pores calculated excluding ligands
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28 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.14 2.33 41.7 -1.64 -0.36 25.0 83 9 4 3 3 0 0 0  C 94 N A 95 N C 96 N C 97 N A 98 N C 99 N
2 1.49 1.55 44.0 -1.15 -0.54 17.9 75 4 2 1 2 1 0 0  G 76 P U 77 P U 80 P U 83 P C 85 P G 86 P U 87 P
U 89 P G 90 P G 91 P G 92 P U 100 P G 101 P C 102
P
3 2.68 2.95 44.7 -1.47 -0.52 19.9 90 7 3 7 3 0 0 0  
4 2.69 2.93 51.5 -1.90 -0.67 14.3 84 6 2 5 2 0 0 0  G 76 I U 77 I G 78 I G 88 I U 100 I G 101 I
5 1.29 1.29 52.7 -2.29 -0.76 18.7 85 7 2 5 1 0 0 0  G 78 I C 99 I U 100 I
6 2.16 2.34 62.6 -1.67 -0.48 23.0 82 11 4 4 4 0 0 0  G 76 N U 77 N G 78 N G 88 N C 99 N U 100 N G 101 N
7 1.77 1.99 65.2 -1.19 -0.50 19.7 73 4 5 0 2 0 0 1  G 69 J G 101 J C 102 J G 69 O G 70 O C 71 O G 72
O U 73 O C 96 O C 97 O C 99 O U 100 O G 101 O C
102 O
8 1.55 1.61 71.7 -2.02 -0.67 26.3 80 8 3 2 1 1 0 0  C 105 M G 69 P U 77 P G 78 P A 79 P U 80 P U 83 P
C 85 P G 86 P U 87 P G 90 P G 91 P A 98 P C 99 P
U 100 P
9 2.02 2.02 75.9 -1.80 -0.65 21.8 77 5 3 1 1 1 1 0  G 69 J G 101 J C 102 J G 69 O G 70 O C 71 O G 72
O U 73 O C 96 O C 97 O C 99 O U 100 O G 101 O C
102 O
10 1.25 1.28 82.3 -1.69 -0.49 23.0 85 12 5 8 4 0 0 0  G 78 I C 99 I U 100 I
11 2.55 2.55 86.3 -1.63 -0.76 13.7 85 6 3 6 2 0 0 0  U 83 J U 84 J U 75 M G 76 M U 77 M G 78 M C 99 M
U 100 M G 101 M C 102 M G 103 M C 104 M G 101 P C
102 P G 103 P
12 1.55 1.60 91.8 -1.50 -0.46 20.5 79 12 4 6 5 4 0 0  G 76 P U 77 P U 80 P U 83 P C 85 P G 86 P U 87 P
U 89 P G 90 P G 91 P G 92 P U 100 P
13 1.55 1.60 98.0 -1.40 -0.52 18.2 80 12 6 9 3 4 0 0  G 76 P U 77 P U 80 P U 83 P C 85 P G 86 P U 87 P
U 89 P G 90 P G 91 P G 92 P U 100 P
14 3.22 4.01 101.1 -1.69 -0.57 19.8 88 8 4 9 3 1 0 0  C 81 J U 84 J U 75 M C 102 M G 103 M C 104 M G
101 P C 102 P G 103 P
15 2.67 2.94 110.9 -1.70 -0.63 18.7 86 8 7 11 2 1 0 0  C 81 J U 84 J U 75 M C 102 M G 103 M C 104 M G
101 P C 102 P G 103 P
16 2.79 2.82 116.8 -1.94 -0.67 22.8 78 10 6 3 2 2 1 0  G 76 J U 77 J G 78 J C 81 J U 84 J G 88 J C 99 J
U 100 J G 101 J C 102 J U 75 M C 102 M G 103 M C
104 M G 101 P C 102 P G 103 P
17 1.65 1.98 121.6 -1.73 -0.61 22.5 75 10 7 2 4 1 0 1  G 76 J U 77 J G 78 J C 81 J U 84 J G 88 J C 99 J
U 100 J G 101 J C 102 J U 75 M C 102 M G 103 M C
104 M G 101 P C 102 P G 103 P
18 2.84 2.84 123.9 -2.18 -0.62 24.5 83 17 8 9 4 1 1 0  G 76 J U 77 J G 78 J G 88 J C 99 J U 100 J G 101
J C 102 J
19 1.79 2.01 128.7 -1.97 -0.57 23.7 81 17 9 8 6 0 0 1  G 76 J U 77 J G 78 J G 88 J C 99 J U 100 J G 101
J C 102 J
20 2.69 2.95 133.7 -2.15 -0.66 23.7 82 17 11 11 3 1 1 0  G 76 J U 77 J G 78 J G 88 J C 99 J U 100 J G 101
J C 102 J
21 2.03 2.03 135.7 -1.58 -0.63 19.0 78 11 3 2 3 1 0 0  G 69 J G 76 J U 77 J G 78 J C 81 J U 84 J G 88 J
C 99 J U 100 J G 101 J C 102 J U 75 M C 102 M G
103 M C 104 M G 69 O G 70 O C 71 O G 72 O U 73 O
C 96 O C 97 O C 99 O U 100 O G 101 O C 102 O G
101 P C 102 P G 103 P
22 1.97 1.97 136.5 -1.77 -0.62 19.6 82 16 5 6 5 0 0 0  G 69 J G 76 J U 77 J G 78 J G 88 J C 99 J U 100 J
G 101 J C 102 J G 69 O G 70 O C 71 O G 72 O U 73
O C 96 O C 97 O C 99 O U 100 O G 101 O C 102 O
23 1.76 2.32 138.4 -1.91 -0.61 22.4 80 17 12 10 5 0 0 1  G 76 J U 77 J G 78 J G 88 J C 99 J U 100 J G 101
J C 102 J
24 1.58 1.77 30.0 -1.70 -0.71 20.2 78 4 2 0 0 0 0 0  G 69 K G 70 K C 71 K G 72 K C 97 K A 98 K C 99 K
U 100 K G 101 K C 102 K G 103 K
25 1.31 1.31 36.6 -1.34 -0.69 12.8 78 4 1 2 1 0 0 0  G 69 L G 76 L U 77 L G 88 L C 99 L U 100 L G 101
L C 102 L
26 1.49 1.49 84.5 -1.44 -0.50 23.0 84 8 5 2 4 1 0 0  U 75 K G 86 K U 87 K G 88 K U 100 K
27 1.29 1.29 121.6 -1.82 -0.50 24.3 79 20 8 6 5 0 0 0  G 76 K U 77 K G 78 K G 88 K C 99 K U 100 K G 69 L
C 99 L U 100 L G 101 L C 102 L
28 1.54 1.80 122.8 -1.80 -0.52 23.5 79 21 9 6 5 0 0 0  G 76 K U 77 K G 78 K C 99 K U 100 K G 101 K G 76
L U 77 L G 78 L G 88 L C 99 L U 100 L G 101 L
29 1.07 3.14 30.4 2.54 0.82 7.5 72 2 3 0 11 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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