PDBsum entry 1kog Go to PDB code:  Tunnel analysis for: 1kog calculated with MOLE 2.0 PDB id 1kog Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 2.85 55.3 -0.75 0.12 22.7 80 9 2 2 5 5 0 0   2 1.37 2.88 55.7 -0.72 0.09 21.9 81 10 2 2 6 5 0 0   3 1.39 2.90 55.9 -0.77 0.04 21.9 81 9 2 2 6 5 0 0   4 1.41 1.47 23.9 -2.69 -0.70 25.2 80 4 3 4 0 1 0 1  TSB 2002 A 5 1.09 3.47 27.8 1.85 0.63 6.4 76 1 1 2 8 1 0 0   6 1.10 3.39 28.6 2.40 0.81 3.8 75 1 0 1 8 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.