PDBsum entry 1koc Go to PDB code:  Tunnel analysis for: 1koc calculated with MOLE 2.0 PDB id 1koc Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels Length Hydropathy Hydrophobicity Polarity Mutability Residue..type Ligands Radius 1 2.22 6.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  14 G A,1 ARG B,31 G B,32 U B,33 A B,35 G B 2 1.65 6.8 0.00 0.00 0.0 0 0 0 0 0 0 0 0  7 A A,8 A A,10 G A,33 A B,34 G B,38 G B 3 1.53 10.3 0.00 0.00 0.0 0 0 0 0 0 0 0 0  7 A A,8 A A,9 G A,10 G A,11 A A,33 A B,34 G B,37 C B 4 1.33 12.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 A A,8 A A,1 ARG B,30 G B,31 G B,33 A B,34 G B, 35 G B 5 1.33 18.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  8 A A,9 G A,11 A A,14 G A,1 ARG B,30 G B,31 G B, 32 U B,33 A B,35 G B,36 U B 6 1.33 20.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 A A,8 A A,10 G A,11 A A,14 G A,1 ARG B,30 G B, 31 G B,32 U B,33 A B,34 G B,35 G B,36 U B,37 C B, 38 G B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.