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PDBsum entry 1kfv

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 1kfv calculated with MOLE 2.0 PDB id
1kfv
Pores calculated on whole structure Pores calculated excluding ligands

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1 pore, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.47 1.47 38.7 -1.34 -0.62 19.9 81 3 2 0 2 0 1 0  MSE 75 A DT 6 D PDI 7 D DT 8 D DT 9 D DT 10 D DC
11 D DG 14 E DA 15 E DG 16 E DA 17 E DA 18 E DA
23 E
2 1.69 1.69 116.3 -1.77 -0.44 26.2 76 11 7 1 4 2 1 0  MSE 75 B DT 6 G PDI 7 G DT 8 G DT 9 G DT 10 G DC
11 G DT 12 G DG 14 H DA 15 H DG 16 H DA 17 H DA
18 H DG 24 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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