 |
PDBsum entry 1kfq
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1kfq calculated with MOLE 2.0
|
PDB id
|
|
|
|
1kfq
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
7 pores,
coloured by radius |
 |
7 pores,
coloured by radius
|
7 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.15 |
1.19 |
27.1 |
-1.17 |
-0.12 |
16.3 |
80 |
 |
3 |
2 |
1 |
4 |
4 |
0 |
0 |
 |
|
 |
 |
2 |
 |
1.15 |
1.19 |
28.6 |
-1.37 |
-0.15 |
16.7 |
75 |
3 |
2 |
1 |
2 |
5 |
0 |
0 |
|
 |
3 |
 |
2.62 |
2.64 |
41.2 |
-2.26 |
-0.77 |
24.9 |
87 |
4 |
4 |
5 |
0 |
1 |
0 |
0 |
|
 |
4 |
 |
2.47 |
3.60 |
53.9 |
-2.46 |
-0.67 |
25.9 |
90 |
7 |
3 |
7 |
0 |
1 |
0 |
0 |
|
 |
5 |
 |
1.65 |
1.96 |
58.8 |
-1.14 |
-0.03 |
19.4 |
83 |
7 |
3 |
2 |
3 |
4 |
0 |
0 |
|
 |
6 |
 |
3.19 |
3.43 |
65.4 |
-0.52 |
-0.28 |
14.0 |
84 |
4 |
3 |
5 |
8 |
0 |
0 |
0 |
|
 |
7 |
 |
2.64 |
2.62 |
65.6 |
-0.80 |
-0.37 |
17.7 |
85 |
4 |
4 |
5 |
7 |
1 |
1 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |