PDBsum entry 1kd4 Go to PDB code:  Tunnel analysis for: 1kd4 calculated with MOLE 2.0 PDB id 1kd4 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels Length Hydropathy Hydrophobicity Polarity Mutability Residue..type Ligands Radius 1 1.56 11.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2 G A,3 U A,4 C A,4 C B,5 A B 2 1.55 11.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 C A,5 A A,2 G B,3 U B,4 C B 3 1.59 12.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2 G A,3 U A,4 C A,5 A A,6 C A,4 C B,5 A B 4 1.61 13.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 C A,5 A A,6 C A,1 G B,2 G B,3 U B,4 C B 5 1.61 16.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 C A,5 A A,6 C A,7 A A,8 G A,1 G B,2 G B,3 U B,4 C B,501 BA B 6 1.61 16.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 C A,5 A A,6 C A,7 A A,8 G A,1 G B,2 G B,3 U B,4 C B,501 BA B 7 1.60 17.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1 G A,2 G A,3 U A,4 C A,502 BA A,4 C B,5 A B,6 C B,7 A B,8 G B,11 C B 8 1.60 18.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1 G A,2 G A,3 U A,4 C A,5 A A,6 C A,502 BA A,4 C B,5 A B,6 C B,7 A B,8 G B,11 C B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.