PDBsum entry 1kd2 Go to PDB code:  Pore analysis for: 1kd2 calculated with MOLE 2.0 PDB id 1kd2 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.36 1.45 25.2 -1.42 -0.36 14.9 79 4 0 0 0 1 1 1   2 3.13 3.97 40.4 -1.18 -0.19 23.6 87 6 3 3 6 1 2 0   3 1.22 1.23 41.7 0.44 0.12 10.3 80 5 0 2 10 2 1 0  HEM 147 B 4 1.19 1.20 43.0 -0.42 0.00 16.4 80 8 0 2 7 2 1 0  HEM 147 D 5 3.13 4.34 45.1 -0.97 -0.19 20.6 87 6 3 3 7 1 2 0   6 1.26 1.25 45.8 0.45 0.34 12.7 79 4 0 4 9 5 0 0  HEM 147 B 7 1.37 1.45 49.2 -1.99 -0.36 22.1 81 8 0 1 1 1 1 1   8 1.24 1.24 49.6 -1.09 -0.20 18.0 83 8 0 3 8 2 0 0  HEM 147 D 9 1.23 1.23 54.7 -0.47 0.05 16.0 81 8 0 3 9 2 0 0  HEM 147 B 10 1.32 1.31 60.4 -0.16 0.01 17.9 85 6 3 3 13 2 1 0  HEM 147 B 11 1.28 1.26 62.1 0.13 0.17 16.9 77 5 2 2 17 4 0 0  HEM 147 B HEM 147 D 12 1.32 1.76 61.8 -0.96 -0.10 19.6 76 7 2 1 10 4 1 1  HEM 147 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.