PDBsum entry 1kd2 Go to PDB code:  Tunnel analysis for: 1kd2 calculated with MOLE 2.0 PDB id 1kd2 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 2.12 35.1 -1.12 -0.09 18.0 82 5 1 1 5 2 1 1   2 1.17 2.10 46.6 -1.17 -0.09 18.2 80 10 1 2 7 2 1 1   3 1.20 2.25 50.9 -1.42 -0.04 24.6 78 12 2 2 7 2 1 1   4 1.19 2.23 52.4 0.27 0.22 12.0 77 7 1 1 13 3 0 1  HEM 147 B 5 1.21 1.59 62.5 -0.33 0.15 18.4 77 9 2 2 14 3 0 1  HEM 147 D 6 1.58 1.76 18.5 -1.85 -0.41 21.4 83 3 1 2 1 0 2 0   7 1.18 1.39 15.9 0.91 0.23 11.6 72 1 1 0 6 2 0 0   8 1.17 1.40 20.0 1.77 0.59 6.5 68 0 1 0 8 3 0 0   9 1.20 1.40 20.9 1.68 0.61 6.5 66 0 1 0 10 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.