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PDBsum entry 1k9d
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Tunnel analysis for: 1k9d calculated with  MOLE 2.0
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PDB id
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1k9d
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.10 |
1.10 |
36.6 |
-0.82 |
-0.15 |
11.1 |
84 |
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5 |
2 |
4 |
2 |
3 |
0 |
0 |
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2 |
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1.17 |
1.67 |
29.9 |
-1.74 |
-0.28 |
23.8 |
73 |
3 |
4 |
3 |
5 |
4 |
0 |
0 |
GOL 701 A
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3 |
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1.32 |
1.41 |
27.9 |
-0.82 |
0.05 |
11.9 |
77 |
3 |
3 |
0 |
2 |
4 |
0 |
0 |
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4 |
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1.31 |
1.41 |
29.0 |
-0.77 |
0.08 |
11.9 |
76 |
3 |
3 |
0 |
3 |
4 |
0 |
0 |
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5 |
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1.34 |
1.72 |
16.6 |
-0.91 |
0.22 |
18.4 |
75 |
1 |
1 |
1 |
1 |
2 |
0 |
0 |
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6 |
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1.44 |
1.98 |
18.5 |
0.45 |
0.26 |
4.5 |
73 |
1 |
0 |
0 |
3 |
4 |
1 |
0 |
GOL 704 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program