PDBsum entry 1k8a Go to PDB code:  Tunnel analysis for: 1k8a calculated with MOLE 2.0 PDB id 1k8a Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.36 116.3 -0.40 -0.63 5.8 97 3 0 3 4 0 0 0  U 624 A U 625 A U 626 A A 628 A A 632 A C 633 A G 634 A C 764 A G 765 A G 901 A G 956 A A 957 A G 958 A C 1044 A G 1046 A U 1047 A G 1048 A C 1049 A G 1050 A C 1051 A G 1052 A G 1055 A C 1060 A C 1061 A U 1062 A A 1358 A U 1359 A C 1360 A C 1361 A A 2101 A G 2481 A G 2482 A A 2483 A C 2533 A U 2535 A G 2537 A NA 8350 A A 3077 B U 3079 B A 3080 B C 3081 B A 3093 B G 3094 B C 3095 B A 3105 B 2 1.22 1.22 128.2 -0.53 -0.67 6.5 96 5 0 4 4 0 0 0  U 555 A C 556 A C 557 A U 595 A C 596 A A 597 A C 598 A G 607 A A 608 A U 609 A G 622 A G 634 A A 635 A C 638 A A 639 A G 640 A C 764 A G 765 A G 901 A G 902 A U 1320 A A 1321 A G 1322 A G 1323 A G 1324 A G 1325 A U 1326 A A 1331 A C 1332 A U 1333 A A 1355 A A 1356 A A 1357 A A 1358 A U 1359 A C 1360 A C 1361 A A 2101 A G 2537 A 3 1.29 1.39 138.6 -0.32 -0.69 5.3 93 1 2 1 4 0 0 0  U 624 A U 625 A U 626 A A 628 A A 632 A C 633 A G 634 A C 764 A G 765 A G 901 A G 911 A A 913 A A 914 A C 915 A A 929 A C 930 A C 931 A A 943 A G 1027 A U 1030 A G 1031 A A 1032 A C 1033 A C 1044 A G 1045 A G 1046 A U 1062 A G 1063 A U 1064 A G 1065 A U 1066 A A 1067 A C 1272 A C 1273 A G 1284 A U 1285 A U 1288 A C 1289 A A 1358 A U 1359 A C 1360 A C 1361 A A 2101 A G 2481 A G 2482 A A 2483 A U 2484 A C 2533 A U 2535 A G 2537 A NA 8350 A 4 1.29 1.40 139.6 -0.65 -0.53 11.1 85 5 4 4 5 1 0 0  A 466 A G 467 A U 468 A A 476 A A 495 A A 497 A A 498 A G 499 A G 514 A C 764 A G 765 A A 766 A A 767 A U 768 A A 844 A A 882 A U 883 A U 888 A C 889 A A 895 A C 896 A A 897 A U 1359 A C 1360 A C 1361 A G 1389 A A 1390 A G 1425 A C 1426 A A 1427 A C 1428 A A 1689 A A 2101 A A 2479 A G 2480 A 5 1.34 1.34 22.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 1173 A C 1176 A A 1177 A G 1178 A C 1179 A U 1180 A A 1181 A A 1194 A G 1195 A G 1197 A U 1198 A C 1201 A A 1202 A 6 1.28 1.43 16.5 -1.15 -0.66 15.3 85 2 1 0 1 0 0 0  C 136 A U 137 A C 260 A A 261 A 7 1.28 1.42 24.6 -1.47 -0.65 19.1 85 2 1 0 1 0 0 0  C 136 A U 137 A C 260 A A 261 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.