 |
PDBsum entry 1k3m
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Hormone/growth factor
|
PDB id
|
|
|
|
1k3m
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Contents |
 |
|
|
|
|
|
|
|
|
* Residue conservation analysis
|
|
|
|
|
Generate full PROCHECK analyses
|
PROCHECK summary for 1k3m
Ramachandran plot
PROCHECK statistics
1. Ramachandran Plot statistics
No. of
residues %-tage
------ ------
Most favoured regions [A,B,L] 26 60.5%**
Additional allowed regions [a,b,l,p] 13 30.2%
Generously allowed regions [~a,~b,~l,~p] 2 4.7%
Disallowed regions [XX] 2 4.7%*
---- ------
Non-glycine and non-proline residues 43 100.0%
End-residues (excl. Gly and Pro) 3
Glycine residues 4
Proline residues 1
----
Total number of residues 51
Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good
quality model would be expected to have over 90% in the most favoured regions [A,B,L].
2. G-Factors
Average
Parameter Score Score
--------- ----- -----
Dihedral angles:-
Phi-psi distribution -1.36**
Chi1-chi2 distribution -1.55**
Chi1 only -0.69*
Chi3 & chi4 0.28
Omega 0.65
-0.55*
=====
Main-chain covalent forces:-
Main-chain bond lengths -0.32
Main-chain bond angles 0.28
0.03
=====
OVERALL AVERAGE -0.35
=====
G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.
Values below -0.5* - unusual
Values below -1.0** - highly unusual
Important note: The main-chain
bond-lengths and bond angles are compared with
the Engh & Huber (1991) ideal values derived
from small-molecule data. Therefore, structures
refined using different restraints may show
apparently large deviations from normality.
|
|
|
