PDBsum entry 1k0y Go to PDB code:  Tunnel analysis for: 1k0y calculated with MOLE 2.0 PDB id 1k0y Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 2.79 34.2 -0.71 0.11 11.6 83 4 0 2 5 2 1 1  CNO 802 D 2 1.19 2.71 38.0 -0.65 0.02 13.7 81 5 1 2 5 2 3 1  CNO 801 D 3 1.25 2.74 40.4 -0.80 0.05 16.4 82 8 2 3 8 2 0 1  CNO 802 D 4 1.19 2.75 46.4 -0.92 0.02 17.4 83 10 0 3 7 2 1 1  CNO 801 D 5 1.19 2.73 46.8 -0.92 0.05 18.8 83 9 1 3 9 2 0 1  CNO 801 D CNO 802 D 6 1.20 2.76 52.6 0.43 0.32 11.2 78 7 0 2 11 3 0 1  HEM 348 B CNO 801 D 7 1.27 2.71 52.9 -1.03 -0.04 19.6 83 9 2 3 10 2 1 1  CNO 801 D CNO 802 D 8 1.22 1.21 55.5 0.23 0.24 12.4 76 7 1 1 13 3 0 1  HEM 748 D CNO 802 D 9 1.23 2.68 55.4 -0.97 -0.01 18.3 78 10 1 1 6 3 1 2  CNO 801 D 10 1.28 2.73 58.0 -0.99 -0.02 19.0 76 9 2 1 9 3 1 2  CNO 801 D CNO 802 D 11 1.25 2.81 62.4 0.27 0.29 13.7 78 7 1 3 15 3 0 1  HEM 348 B CNO 801 D CNO 802 D 12 1.19 1.19 68.2 0.14 0.26 15.2 78 10 2 2 15 3 0 1  HEM 748 D CNO 801 D CNO 802 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.