PDBsum entry 1k0d Go to PDB code:  Tunnel analysis for: 1k0d calculated with MOLE 2.0 PDB id 1k0d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.09 1.09 20.0 -0.44 0.12 15.7 79 4 0 2 2 3 1 0  GSH 355 A 2 1.49 1.49 24.7 -2.04 -0.49 20.0 82 4 1 5 0 4 0 0  GSH 355 A 3 1.08 1.08 25.9 0.44 0.13 4.9 80 2 0 3 4 2 2 0  GSH 355 A 4 1.59 1.60 32.4 -1.13 -0.33 12.3 81 2 1 6 2 4 1 0  GSH 355 A 5 1.28 1.36 19.2 -2.47 -0.55 5.7 81 2 0 4 1 2 0 0   6 1.42 1.66 17.7 -2.35 -0.16 13.7 62 1 0 1 1 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.