PDBsum entry 1k08 Go to PDB code:  Tunnel analysis for: 1k08 calculated with MOLE 2.0 PDB id 1k08 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.37 34.2 -1.61 -0.39 17.9 83 5 4 4 2 2 0 0  BZD 998 A PLP 999 A 2 1.28 2.15 43.8 -1.59 -0.44 19.1 80 5 4 4 2 3 2 0  BZD 998 A PLP 999 A 3 1.35 2.58 54.8 -1.12 -0.32 18.7 84 6 5 5 5 3 0 0  BZD 998 A PLP 999 A 4 1.03 2.49 27.7 1.63 0.54 6.2 73 2 0 1 8 1 0 1   5 1.24 3.00 15.9 2.21 0.82 7.2 72 1 1 1 6 2 0 0   6 1.47 2.00 15.3 -2.64 -0.22 25.1 76 3 1 2 0 3 0 0   7 1.47 2.01 18.5 -2.21 -0.04 24.1 79 3 1 2 0 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.