PDBsum entry 1jzz Go to PDB code:  Tunnel analysis for: 1jzz calculated with MOLE 2.0 PDB id 1jzz Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   18 tunnels, coloured by tunnel radius 17 tunnels, coloured by tunnel radius 17 tunnels, coloured as in list below Tunnels Length Hydropathy Hydrophobicity Polarity Mutability Residue..type Ligands Radius 1 1.36 50.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  572 G A,582 G A,583 C A,584 A A,585 U A,586 G A, 587 A A,1268 U A,1269 G A,1270 C A,2000 U A,2001 G A,2003 A A,2013 A A,2014 A A,2015 G A,2016 A A, 2017 U A,2018 G A,2038 C A,2040 A A,2041 A A,2042 A A,2043 A A,2433 G A,2434 G A,2478 C A 2 1.35 55.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  582 G A,583 C A,584 A A,760 U A,1998 A A,1999 U A, 2000 U A,2001 G A,2003 A A,2013 A A,2014 A A,2015 G A,2016 A A,2017 U A,2018 G A,2037 A A,2038 C A, 2039 G A,2040 A A,2041 A A,2433 G A,2434 G A,2478 C A,2590 U A,2594 U A 3 1.38 55.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  572 G A,582 G A,583 C A,584 A A,585 U A,586 G A, 587 A A,588 G A,1268 U A,1269 G A,1271 C A,1272 G A,1998 A A,1999 U A,2000 U A,2001 G A,2003 A A, 2013 A A,2014 A A,2015 G A,2016 A A,2017 U A,2018 G A,2038 C A,2040 A A,2041 A A,2433 G A,2434 G A, 2478 C A 4 1.36 60.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  15 G A,16 G A,17 G A,527 C A,528 G A,529 U A,582 G A,583 C A,584 A A,1276 U A,1277 G A,1279 G A, 2000 U A,2001 G A,2002 A A,2003 A A,2004 U A,2005 U A,2013 A A,2014 A A,2015 G A,2016 A A,2017 U A, 2018 G A,2037 A A,2038 C A,2433 G A,2434 G A,2478 C A,2594 U A 5 1.36 64.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  17 G A,18 U A,19 C A,525 A A,526 C A,527 C A,542 A A,582 G A,583 C A,584 A A,1275 A A,1276 U A, 2000 U A,2001 G A,2002 A A,2003 A A,2004 U A,2005 U A,2013 A A,2014 A A,2015 G A,2016 A A,2017 U A, 2018 G A,2037 A A,2038 C A,2433 G A,2434 G A,2478 C A,2594 U A 6 1.50 16.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  613 A A,614 G A,636 G A,637 G A,638 A A,666 U A, 668 A A,669 G A,670 U A 7 1.78 5.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2807 U A,2856 U A,2857 C A,2858 A A,2859 U A 8 1.99 7.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2807 U A,2857 C A,2858 A A,2859 U A 9 1.40 5.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1463 A A,1543 G A,1544 A A,1545 G A,1558 C A,1559 G A,1560 A A 10 1.38 12.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2269 G A,2270 U A,2323 U A,2324 G A,2351 G A,2352 A A,2353 G A 11 1.95 5.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2079 A A,2080 U A,2081 U A,2082 C A,2175 A A,2176 U A 12 1.62 5.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1040 A A,1041 G A,2445 C A,2446 C A,2464 G A 13 1.41 5.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2092 U A,2093 G A,2132 G A,2163 U A,2164 G A 14 2.15 8.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  320 A A,321 A A,322 A A,339 U A,340 G A,341 A A 15 1.77 9.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  320 A A,321 A A,322 A A,339 U A,340 G A,341 A A 16 1.75 9.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  320 A A,321 A A,322 A A,339 U A,340 G A,341 A A 17 1.92 3.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2789 U A,2790 C A,2860 C A,2861 A A,2862 G A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.