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PDBsum entry 1jz3
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Pore analysis for: 1jz3 calculated with MOLE 2.0 PDB id
1jz3
Pores calculated on whole structure Pores calculated excluding ligands
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41 pores, coloured by radius 53 pores, coloured by radius 53 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.15 3.93 28.2 -2.48 -0.70 25.8 80 3 6 3 1 0 2 1  DMS 8420 B
2 1.62 2.25 34.6 -0.82 -0.06 10.2 63 5 1 2 2 4 3 0  DMS 8403 D
3 1.35 2.87 36.6 -1.18 -0.26 18.4 86 4 3 4 5 0 1 0  
4 1.35 2.88 37.7 -0.97 -0.31 15.5 84 3 4 2 5 0 1 0  
5 2.77 4.77 43.1 -2.05 -0.55 18.7 90 6 2 6 5 0 2 0  
6 2.72 2.95 44.2 -1.78 -0.59 15.7 88 5 3 4 5 0 2 0  
7 1.82 2.01 51.4 -1.17 -0.33 17.0 77 8 2 7 5 5 2 1  MG 3003 D
8 1.80 1.81 56.3 -1.30 -0.34 12.0 78 2 4 10 2 2 6 2  
9 1.82 2.01 58.9 -1.74 -0.50 20.6 76 4 5 8 5 6 1 1  MG 3003 C DMS 8427 C DMS 8503 C MG 3003 D DMS
8407 D
10 3.29 3.86 58.7 -2.48 -0.63 26.7 78 5 7 5 3 3 2 0  MG 3003 C DMS 8427 C DMS 8503 C DMS 8407 D
11 2.73 2.92 59.2 -1.48 -0.30 20.1 81 9 4 9 5 4 2 0  MG 3003 C DMS 8427 C DMS 8503 C DMS 8407 D
12 1.82 2.00 60.7 -0.78 -0.26 14.1 76 7 7 6 6 8 0 1  MG 3003 D
13 1.58 1.58 61.1 -1.82 -0.65 19.1 88 5 5 5 2 0 1 0  DMS 8407 C DMS 8503 D
14 1.59 1.60 64.4 -1.31 -0.47 11.9 78 4 2 6 4 3 0 1  DMS 8407 C MG 3003 D DMS 8503 D
15 2.39 2.99 66.4 -1.61 -0.34 21.4 82 12 5 9 5 4 3 0  DMS 8407 C MG 3003 D DMS 8503 D
16 2.40 2.88 69.2 -1.39 -0.32 18.0 78 9 7 7 6 8 2 0  MG 3003 C DMS 8427 C DMS 8503 C DMS 8407 D
17 2.71 2.99 75.6 -1.20 -0.28 18.3 81 13 10 8 6 7 1 0  DMS 8407 C MG 3003 D DMS 8503 D
18 1.81 2.01 82.4 -1.51 -0.49 18.1 79 6 5 10 6 5 0 1  MG 3003 C DMS 8427 C DMS 8503 C MG 3003 D
19 1.86 3.87 82.3 -2.01 -0.58 22.1 81 7 7 6 4 2 1 0  MG 3003 C DMS 8427 C DMS 8503 C
20 1.68 1.67 87.2 -1.98 -0.57 21.1 80 6 6 9 5 5 1 0  MG 3003 C DMS 8407 C DMS 8427 C DMS 8503 C MG
3003 D DMS 8407 D DMS 8503 D
21 1.89 3.82 88.3 -1.15 -0.34 17.7 80 10 7 7 7 7 1 0  DMS 8427 C DMS 8503 C
22 3.65 4.19 101.8 -2.02 -0.49 22.5 81 8 9 9 5 6 4 0  MG 3003 C MG 3105 C DMS 8407 C DMS 8427 C DMS
8503 C DMS 8506 C MG 3003 D DMS 8407 D DMS 8503 D
23 1.79 1.78 104.6 -1.01 -0.30 14.0 81 11 9 9 10 7 1 0  DMS 8407 C MG 3003 D DMS 8503 D
24 1.23 1.40 157.2 -1.08 -0.16 14.8 74 13 6 6 11 6 10 1  DMS 8420 B DMS 8403 C DMS 8404 C DMS 8501 C
25 1.32 1.53 160.8 -1.45 -0.36 17.1 79 13 9 12 11 4 5 1  DMS 8420 B DMS 8403 C DMS 8404 C DMS 8501 C DMS
8503 C DMS 8407 D
26 1.30 1.51 183.7 -1.28 -0.28 14.1 74 14 8 13 10 7 15 3  DMS 8420 B DMS 8403 C DMS 8404 C DMS 8501 C
27 1.31 1.56 186.3 -1.35 -0.35 17.2 77 15 13 17 15 10 6 3  DMS 8420 B MG 3003 C DMS 8403 C DMS 8404 C DMS
8427 C DMS 8501 C DMS 8503 C MG 3003 D DMS 8503 D
28 1.31 1.48 187.1 -1.24 -0.32 16.9 77 18 17 13 16 11 7 1  DMS 8420 B MG 3003 C DMS 8403 C DMS 8404 C DMS
8427 C DMS 8501 C DMS 8503 C
29 1.83 2.01 180.3 -1.45 -0.39 16.1 79 8 5 9 6 6 3 1  MG 3105 C DMS 8407 C DMS 8413 C DMS 8506 C MG
3003 D DMS 8503 D
30 1.68 1.67 193.1 -1.67 -0.51 19.7 85 8 6 9 5 3 3 0  MG 3105 C DMS 8407 C DMS 8506 C DMS 8503 D
31 1.61 2.10 37.1 -1.01 -0.18 14.1 73 6 3 2 3 4 0 0  DMS 8403 A
32 2.49 4.43 43.3 -2.11 -0.68 18.4 89 4 6 4 4 0 2 0  
33 4.14 5.87 62.3 -1.90 -0.49 22.4 81 8 4 7 4 4 0 0  MG 3003 A DMS 8407 A DMS 8503 A MG 3003 B DMS
8407 B DMS 8427 B
34 1.57 2.44 64.3 -1.57 -0.40 18.6 78 7 4 7 4 3 1 0  DMS 8407 A DMS 8403 B
35 2.31 2.74 67.5 -1.36 -0.29 17.9 82 10 4 9 6 4 2 0  DMS 8407 A MG 3003 B DMS 8427 B
36 2.54 2.54 75.0 -1.53 -0.33 19.3 82 11 4 10 8 4 2 0  MG 3003 A DMS 8503 A DMS 8407 B
37 2.29 2.66 74.9 -1.09 -0.27 15.7 80 10 8 7 7 7 1 0  MG 3003 A DMS 8503 A
38 2.54 2.54 83.6 -1.23 -0.29 16.7 80 11 8 8 10 7 2 0  DMS 8407 A MG 3003 B DMS 8427 B
39 1.57 2.50 95.2 -1.94 -0.47 22.2 77 10 9 11 7 8 1 0  MG 3003 A DMS 8407 A DMS 8503 A MG 3003 B DMS
8403 B DMS 8407 B DMS 8427 B
40 1.22 1.77 123.7 -1.59 -0.47 18.8 84 8 6 8 5 3 3 0  BTB 2002 A DMS 8407 A DMS 8506 A
41 1.57 2.52 136.2 -1.08 -0.17 14.4 75 9 5 6 6 7 6 0  BTB 2002 A DMS 8506 A DMS 8403 B
42 2.04 3.27 140.2 -1.91 -0.45 22.5 81 9 9 12 7 8 4 0  BTB 2002 A MG 3003 A DMS 8407 A DMS 8503 A DMS
8506 A MG 3003 B DMS 8407 B DMS 8427 B
43 1.18 1.37 145.6 -1.20 -0.32 13.6 79 12 3 16 11 7 2 2  DMS 8407 A MG 3003 B DMS 8427 B
44 1.25 1.46 161.1 -1.09 -0.23 15.0 79 13 10 14 11 12 3 2  MG 3003 A DMS 8503 A BTB 2002 B DMS 8407 B DMS
8506 B
45 2.53 2.88 26.0 -2.03 -0.52 23.5 86 5 4 4 3 0 1 1  DMS 8420 A
46 3.81 4.87 28.2 -0.52 0.04 15.8 77 4 3 3 3 2 2 1  
47 1.49 3.90 37.2 -1.78 -0.12 23.4 78 6 3 4 5 4 0 0  
48 1.71 1.88 42.7 -1.76 -0.49 14.2 74 3 4 4 1 1 7 1  
49 1.13 1.29 48.7 -1.24 -0.30 19.2 82 5 7 4 4 0 3 1  DMS 8420 A DMS 8404 D DMS 8501 D
50 2.45 2.80 48.5 -1.28 -0.26 20.8 80 6 6 5 5 2 2 1  
51 1.25 1.26 53.9 -1.49 -0.44 18.9 81 6 6 5 5 0 5 1  DMS 8404 A DMS 8501 A
52 1.13 1.31 54.3 -1.59 -0.37 19.1 77 7 4 4 4 0 4 2  DMS 8420 A DMS 8404 D DMS 8501 D
53 1.19 1.25 77.6 -1.42 -0.49 16.6 80 6 7 5 6 0 9 0  DMS 8404 A DMS 8501 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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