PDBsum entry 1jyx Go to PDB code:  Pore analysis for: 1jyx calculated with MOLE 2.0 PDB id 1jyx Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   43 pores, coloured by radius 44 pores, coloured by radius 44 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.55 2.85 28.3 -1.38 -0.26 20.1 77 4 5 3 3 1 2 1  DMS 8420 B 2 4.20 4.20 34.6 -2.47 -0.58 24.9 79 6 2 4 1 1 1 0  DMS 8503 C DMS 8407 D 3 2.66 4.70 39.7 -1.98 -0.57 18.9 92 6 2 6 4 0 2 0   4 2.66 4.72 42.5 -2.10 -0.59 18.8 89 5 4 6 4 0 2 0   5 2.28 2.43 51.6 -1.24 -0.24 18.6 81 9 3 7 4 4 1 0  DMS 8503 C 6 2.67 2.78 59.7 -1.28 -0.30 19.0 80 10 2 7 4 4 2 0   7 4.11 5.41 60.0 -2.40 -0.57 26.3 77 9 6 6 3 3 2 0  DMS 8407 C DMS 8503 C 8 3.46 3.81 61.3 -2.79 -0.68 29.2 77 9 8 7 2 2 4 0  DMS 8503 C 9 1.57 2.27 62.3 -1.71 -0.39 20.1 77 9 5 5 3 3 1 0  DMS 8407 C IPT 2002 D DMS 8403 D 10 2.28 2.48 62.7 -0.98 -0.24 16.8 77 9 7 5 5 7 1 0   11 4.20 4.20 64.1 -2.03 -0.53 23.1 78 8 4 6 4 4 0 0  DMS 8407 C DMS 8503 C 12 3.44 3.79 65.4 -2.25 -0.58 23.9 79 8 6 7 3 3 2 0  DMS 8503 C 13 1.73 1.91 68.7 -1.87 -0.49 17.2 76 5 7 6 5 3 7 1  DMS 8420 C 14 2.68 2.73 68.8 -0.99 -0.26 16.8 78 9 6 7 5 6 1 0  DMS 8503 C 15 1.72 1.92 91.8 -2.07 -0.53 20.1 75 8 12 6 5 2 9 2  DMS 8420 B DMS 8420 C 16 2.63 3.42 106.0 -1.80 -0.40 22.8 81 9 8 6 6 2 4 1  DMS 8407 C DMS 8420 C 17 1.73 1.90 131.9 -1.41 -0.36 14.7 79 7 7 11 7 5 7 1  DMS 8407 C 18 1.66 2.28 144.9 -1.80 -0.50 20.6 81 14 12 12 8 6 3 0  DMS 8503 C IPT 2002 D DMS 8403 D DMS 8407 D 19 1.77 1.93 159.9 -1.66 -0.40 17.9 77 10 12 11 7 5 11 2  DMS 8420 B IPT 2001 C 20 1.21 1.46 185.0 -1.41 -0.25 14.3 80 10 6 11 9 7 6 1  DMS 8411 C DMS 8415 C DMS 8503 C DMS 8407 D 21 1.56 2.36 38.1 -1.07 -0.17 13.2 69 5 3 2 3 4 2 0  IPT 2002 A DMS 8403 A 22 1.15 1.83 43.7 -0.94 0.05 10.0 77 5 0 5 3 3 1 1  DMS 8415 A DMS 8407 B 23 2.61 4.53 45.1 -1.37 -0.48 17.0 90 4 3 3 6 0 1 0   24 1.16 1.83 50.1 -1.43 -0.11 13.2 73 7 2 6 3 4 2 1  DMS 8415 A 25 3.99 4.25 53.5 -2.30 -0.59 24.8 78 8 6 6 3 3 1 0   26 2.36 2.43 59.2 -1.58 -0.38 20.2 81 9 4 6 4 4 1 0  DMS 8407 B 27 2.34 2.36 60.4 -1.80 -0.43 20.9 78 11 5 9 4 5 2 0   28 2.35 2.34 61.0 -1.16 -0.27 17.0 78 8 7 7 6 6 1 0   29 4.15 5.93 60.7 -1.84 -0.43 20.7 80 7 5 6 4 4 0 0  DMS 8407 A DMS 8407 B 30 1.16 1.85 63.8 -1.17 -0.19 15.3 79 9 3 8 5 5 2 1  DMS 8415 A 31 1.59 2.60 66.4 -1.51 -0.31 17.2 75 8 5 6 4 4 3 0  DMS 8407 A DMS 8403 B 32 1.15 1.79 66.8 -1.33 -0.27 16.6 79 7 4 8 6 5 1 1  DMS 8415 A 33 2.20 2.55 68.8 -1.26 -0.32 17.6 83 9 4 9 5 4 1 0   34 2.18 2.48 81.2 -1.21 -0.35 17.1 79 9 8 6 6 7 1 0  DMS 8407 B 35 2.16 2.32 82.9 -1.47 -0.39 18.4 76 11 10 9 7 7 2 0   36 1.17 1.75 86.4 -1.02 -0.22 14.3 77 9 8 8 8 8 2 1  DMS 8415 A 37 1.59 2.58 90.3 -1.25 -0.19 16.0 76 9 5 4 4 5 5 0  DMS 8403 B 38 1.68 1.82 109.2 -1.63 -0.39 20.5 81 12 8 11 7 5 3 0  DMS 8407 A 39 1.31 3.87 26.4 -1.82 -0.22 24.0 79 4 2 4 4 2 0 0   40 2.63 3.15 31.7 -0.77 -0.10 14.3 79 5 2 5 4 2 2 1  DMS 8420 A 41 2.62 3.10 34.3 -2.41 -0.55 26.8 77 4 6 3 2 0 3 1  DMS 8420 A 42 2.61 2.98 40.5 -1.19 -0.26 19.1 81 5 6 5 5 2 2 1   43 1.71 2.10 75.2 -2.09 -0.57 19.6 80 10 8 7 5 1 6 1  DMS 8420 A 44 1.72 2.10 78.6 -1.89 -0.50 20.2 78 7 9 6 5 1 6 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.