PDBsum entry 1jw5 Go to PDB code:  Tunnel analysis for: 1jw5 calculated with MOLE 2.0 PDB id 1jw5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 2.32 17.5 2.11 0.93 7.7 68 1 1 0 7 2 0 0   2 1.42 1.55 20.7 0.97 0.39 13.1 72 2 2 1 7 2 0 0   3 1.19 1.35 21.1 0.49 0.10 8.6 80 2 2 2 6 2 0 0   4 1.16 3.42 30.6 1.01 0.57 2.5 68 1 0 0 9 2 4 0   5 1.13 3.29 32.9 1.02 0.54 3.6 70 1 0 0 10 2 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.