PDBsum entry 1jml Go to PDB code:  Tunnel analysis for: 1jml calculated with MOLE 2.0 PDB id 1jml Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.10 2.10 15.9 1.01 0.33 4.5 75 0 1 1 5 2 0 0   2 1.31 1.32 17.2 0.70 0.08 4.5 90 2 0 1 5 1 0 0   3 1.30 1.32 19.0 1.31 0.32 1.4 86 0 0 0 7 2 0 0   4 1.29 1.29 25.5 1.28 0.63 6.5 83 3 0 0 5 3 1 0   5 1.28 1.28 26.1 1.71 0.55 1.8 80 1 0 0 4 3 1 0   6 1.28 1.28 27.0 1.32 0.16 1.7 93 0 0 0 6 1 1 0   7 2.17 2.34 35.7 1.50 0.42 1.6 72 1 0 0 8 5 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.