PDBsum entry 1jmj Go to PDB code:  Tunnel analysis for: 1jmj calculated with MOLE 2.0 PDB id 1jmj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.64 2.75 15.7 -1.27 -0.40 20.3 90 2 1 2 2 0 0 0   2 1.83 1.98 24.7 -2.62 -0.59 31.8 86 3 4 3 1 0 0 0   3 1.87 2.02 25.1 -2.05 -0.36 28.6 81 4 3 2 3 0 0 0   4 1.64 1.77 41.5 -2.36 -0.64 31.1 86 6 6 5 2 0 0 0  CA 501 A 5 1.42 1.38 49.6 -2.75 -0.68 34.9 89 9 7 6 2 0 0 0  NAG 481 B 6 1.21 2.32 34.3 0.45 0.03 3.4 85 1 0 4 4 6 0 0   7 1.46 2.33 19.2 -0.65 -0.52 9.1 91 1 2 2 4 1 0 0   8 1.34 2.46 20.6 -0.21 -0.36 7.5 82 1 2 2 5 2 0 0   9 1.22 1.65 15.8 -1.34 -0.48 13.9 86 2 1 3 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.