PDBsum entry 1jmf Go to PDB code:  Tunnel analysis for: 1jmf calculated with MOLE 2.0 PDB id 1jmf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.62 3.16 32.3 -0.86 0.16 19.9 69 4 4 2 4 6 0 1  UMP 317 A 2 1.63 3.16 35.1 0.17 0.52 14.3 68 2 3 1 6 6 0 1  UMP 317 A 3 1.63 3.15 35.5 -0.05 0.31 6.8 64 1 1 2 7 6 0 0   4 1.63 3.19 36.0 0.66 0.51 11.3 68 3 1 1 6 4 2 0  UMP 317 A 5 1.63 3.16 36.1 0.26 0.51 15.6 70 6 1 1 6 4 1 0  UMP 317 A 6 1.53 3.00 18.4 -2.30 -0.54 30.6 86 2 3 2 1 1 0 0   7 1.27 1.46 20.4 0.45 -0.12 8.1 72 0 1 0 5 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.