PDBsum entry 1jd0 Go to PDB code:  Tunnel analysis for: 1jd0 calculated with MOLE 2.0 PDB id 1jd0 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.47 32.4 -1.70 -0.54 12.2 79 3 3 7 1 1 0 1   2 1.37 1.48 32.8 -1.73 -0.55 11.6 77 2 2 7 3 1 0 1   3 1.40 1.51 34.2 -1.99 -0.67 11.7 78 2 1 7 1 1 1 1   4 1.24 1.45 35.4 -1.92 -0.54 16.2 91 4 3 8 2 0 0 1   5 1.23 1.49 37.3 -1.87 -0.42 18.2 88 4 3 7 2 0 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.