PDBsum entry 1j5o Go to PDB code:  Tunnel analysis for: 1j5o calculated with MOLE 2.0 PDB id 1j5o Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.34 50.3 0.16 -0.21 6.2 82 3 2 4 11 0 2 0   2 1.27 1.29 50.2 0.02 0.00 6.0 71 1 2 3 8 3 2 0  DA 838 P Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.