PDBsum entry 1j4j Go to PDB code:  Tunnel analysis for: 1j4j calculated with MOLE 2.0 PDB id 1j4j Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 3.25 20.1 0.64 0.20 4.6 73 2 0 2 6 2 0 0  MSE 108 B ACO 1301 B 2 1.26 2.98 22.2 0.06 -0.01 6.6 79 2 0 2 6 1 0 0  MSE 108 B ACO 1301 B 3 1.25 2.96 28.9 0.14 -0.05 6.4 76 1 2 3 5 1 0 0  MSE 108 B ACO 1301 B 4 1.24 1.79 17.0 0.70 0.22 10.3 72 2 2 0 5 3 0 0  MSE 123 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.