spacer
spacer

PDBsum entry 1j4h

Go to PDB code: 
Top Page protein ligands tunnels links
Tunnel analysis for: 1j4h calculated with MOLE 2.0 PDB id
1j4h
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
0 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.61 2.85 16.0 0.07 0.87 8.1 66 1 0 0 2 4 0 0  SUB 201 A
2 1.97 2.69 16.7 0.24 0.81 8.8 68 1 1 0 2 4 0 0  SUB 201 A
3 1.53 3.27 19.4 0.06 0.92 6.4 63 1 0 0 3 5 0 0  SUB 201 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer