PDBsum entry 1j4e Go to PDB code:  Pore analysis for: 1j4e calculated with MOLE 2.0 PDB id 1j4e Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.63 2.39 37.0 0.67 0.13 7.7 86 2 2 6 7 0 2 0   2 1.18 1.15 41.2 -0.73 -0.30 10.8 79 4 0 5 7 1 3 0   3 2.76 2.87 86.9 -1.35 -0.04 23.7 84 14 5 3 9 2 2 0   4 1.17 1.32 97.1 -1.40 -0.35 16.9 80 12 3 6 7 2 4 0   5 2.76 4.34 108.5 -1.65 -0.22 21.3 78 13 5 5 4 3 5 0   6 2.74 4.35 109.0 -1.19 0.00 22.1 82 17 5 4 12 3 3 0   7 1.23 1.27 129.5 -1.18 -0.14 19.4 82 18 5 6 15 2 4 0   8 1.72 1.93 43.4 0.37 0.06 6.8 86 2 2 6 8 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.