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PDBsum entry 1j10
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Pore analysis for: 1j10 calculated with  MOLE 2.0
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PDB id
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1j10
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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9 pores,
coloured by radius |
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10 pores,
coloured by radius
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10 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.95 |
5.34 |
34.7 |
-2.02 |
-0.38 |
19.9 |
82 |
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4 |
5 |
4 |
2 |
3 |
0 |
0 |
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2 |
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1.24 |
1.24 |
37.9 |
-2.42 |
-0.28 |
17.3 |
83 |
3 |
1 |
6 |
0 |
2 |
1 |
0 |
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3 |
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1.81 |
1.97 |
37.9 |
-2.16 |
-0.55 |
22.9 |
77 |
6 |
3 |
2 |
2 |
3 |
0 |
0 |
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4 |
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1.85 |
1.97 |
40.0 |
-1.47 |
-0.32 |
14.4 |
73 |
2 |
2 |
4 |
2 |
4 |
1 |
0 |
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5 |
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1.45 |
1.68 |
44.4 |
-1.75 |
-0.49 |
11.3 |
82 |
2 |
3 |
7 |
4 |
4 |
1 |
0 |
XYS 1 I GLC 2 I GLC 3 I
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6 |
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1.14 |
1.28 |
44.6 |
-2.64 |
-0.53 |
20.7 |
81 |
2 |
4 |
6 |
0 |
3 |
0 |
0 |
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7 |
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1.15 |
1.26 |
45.3 |
-1.81 |
-0.45 |
16.4 |
84 |
4 |
3 |
6 |
2 |
2 |
0 |
0 |
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8 |
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1.97 |
2.17 |
45.8 |
-1.26 |
-0.50 |
17.1 |
87 |
3 |
5 |
4 |
4 |
2 |
0 |
0 |
XYS 1 I GLC 2 I GLC 3 I
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9 |
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1.47 |
1.71 |
50.7 |
-1.90 |
-0.52 |
13.9 |
80 |
4 |
3 |
7 |
0 |
4 |
1 |
0 |
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10 |
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1.84 |
1.83 |
52.5 |
-2.30 |
-0.47 |
23.8 |
79 |
5 |
6 |
5 |
1 |
3 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program