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PDBsum entry 1il2

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 1il2 calculated with MOLE 2.0 PDB id
1il2
Pores calculated on whole structure Pores calculated excluding ligands

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13 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.57 1.73 29.6 -2.06 -0.56 29.0 85 6 6 4 2 2 0 0  
2 3.40 5.23 29.7 -2.70 -0.47 35.5 77 4 9 1 0 2 0 0  G 1971 D A 1972 D
3 2.77 2.77 33.9 -1.34 -0.78 15.6 95 1 1 1 0 0 0 0  C 920 C G 922 C A 923 C A 924 C U 925 C G 926 C G
927 C G 928 C C 929 C G 930 C C 931 C U 940 C C
942 C C 943 C G 945 C
4 2.81 2.95 36.8 -2.07 -0.29 30.3 80 3 7 1 2 2 0 0  G 1971 D A 1972 D
5 2.54 2.54 41.3 -0.14 -0.66 4.0 90 1 0 0 1 0 0 0  U 901 C C 902 C C 903 C U 905 C G 906 C A 907 C U
908 C U 948 C 5MC 949 C G 950 C U 959 C U 960 C C
961 C C 962 C C 963 C C 964 C G 965 C U 966 C C
967 C G 973 C C 974 C
6 2.04 2.05 85.7 -2.09 -0.71 24.4 79 5 10 3 1 1 2 0  G 973 C C 974 C C 975 C C 1902 D C 1967 D G 1968
D C 1969 D A 1972 D
7 1.51 1.79 125.8 -1.51 -0.41 23.1 85 15 13 7 11 3 2 0  1MG 1937 D G 1970 D G 1971 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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