 |
PDBsum entry 1il2
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1il2 calculated with MOLE 2.0
|
PDB id
|
|
|
|
1il2
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
13 pores,
coloured by radius |
 |
7 pores,
coloured by radius
|
7 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.57 |
1.73 |
29.6 |
-2.06 |
-0.56 |
29.0 |
85 |
 |
6 |
6 |
4 |
2 |
2 |
0 |
0 |
 |
|
 |
 |
2 |
 |
3.40 |
5.23 |
29.7 |
-2.70 |
-0.47 |
35.5 |
77 |
4 |
9 |
1 |
0 |
2 |
0 |
0 |
G 1971 D A 1972 D
|
 |
3 |
 |
2.77 |
2.77 |
33.9 |
-1.34 |
-0.78 |
15.6 |
95 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
C 920 C G 922 C A 923 C A 924 C U 925 C G 926 C G 927 C G 928 C C 929 C G 930 C C 931 C U 940 C C 942 C C 943 C G 945 C
|
 |
4 |
 |
2.81 |
2.95 |
36.8 |
-2.07 |
-0.29 |
30.3 |
80 |
3 |
7 |
1 |
2 |
2 |
0 |
0 |
G 1971 D A 1972 D
|
 |
5 |
 |
2.54 |
2.54 |
41.3 |
-0.14 |
-0.66 |
4.0 |
90 |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
U 901 C C 902 C C 903 C U 905 C G 906 C A 907 C U 908 C U 948 C 5MC 949 C G 950 C U 959 C U 960 C C 961 C C 962 C C 963 C C 964 C G 965 C U 966 C C 967 C G 973 C C 974 C
|
 |
6 |
 |
2.04 |
2.05 |
85.7 |
-2.09 |
-0.71 |
24.4 |
79 |
5 |
10 |
3 |
1 |
1 |
2 |
0 |
G 973 C C 974 C C 975 C C 1902 D C 1967 D G 1968 D C 1969 D A 1972 D
|
 |
7 |
 |
1.51 |
1.79 |
125.8 |
-1.51 |
-0.41 |
23.1 |
85 |
15 |
13 |
7 |
11 |
3 |
2 |
0 |
1MG 1937 D G 1970 D G 1971 D
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |