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PDBsum entry 1iis

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Top Page protein ligands Protein-protein interface(s) links
Immune system PDB id
1iis
Contents
Protein chains
210 a.a. *
167 a.a. *
Ligands
NDG-NAG-BMA-BMA-
MAN-NDG-MAN-MAN
MAN
NAG-NAG-BMA-BMA-
BMA-BMA-BMA-FUL
Waters ×125
* Residue conservation analysis
procheck   Generate full PROCHECK analyses

PROCHECK summary for 1iis

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]          406       78.5%** 
Additional allowed regions [a,b,l,p]         94       18.2%          
Generously allowed regions [~a,~b,~l,~p]     15        2.9%          
Disallowed regions         [XX]               2        0.4%*  
                                           ----      ------
Non-glycine and non-proline residues        517      100.0%

End-residues (excl. Gly and Pro)              5

Glycine residues                             25
Proline residues                             42
                                           ----
Total number of residues                    589


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.95*     
     Chi1-chi2 distribution          -0.61*     
     Chi1 only                       -0.29      
     Chi3 & chi4                      0.46      
     Omega                            0.50      
                                                  -0.22      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.52      
     Main-chain bond angles           0.14      
                                                   0.30      
                                                  =====

     OVERALL AVERAGE                              -0.01      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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