PDBsum entry 1iis Go to PDB code:  Tunnel analysis for: 1iis calculated with MOLE 2.0 PDB id 1iis Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.70 1.86 15.1 -0.54 -0.08 7.1 68 1 0 1 3 0 2 0   2 1.72 1.88 16.2 -0.58 -0.13 8.8 70 1 1 0 2 0 2 0   3 1.72 1.88 18.3 -0.96 -0.13 7.6 70 1 0 1 2 0 2 0   4 1.32 1.31 15.7 2.50 0.70 1.0 71 0 0 0 7 3 0 0   5 1.17 1.18 17.0 -0.77 -0.27 15.6 70 0 2 0 3 1 1 0   6 1.16 1.16 21.5 -1.17 -0.34 17.7 64 1 2 0 2 1 3 0   7 1.10 2.66 21.2 -2.07 -0.77 23.8 87 3 3 3 0 0 0 0   8 1.15 2.23 16.4 1.18 0.57 9.3 74 0 1 1 4 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.