spacer
spacer

PDBsum entry 1id5

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1id5 calculated with MOLE 2.0 PDB id
1id5
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.42 1.58 16.3 -1.41 -0.77 18.2 79 3 3 0 1 0 3 0  CA 600 H
2 1.35 1.39 24.1 -1.37 -0.71 18.9 84 3 2 2 1 1 1 0  
3 1.22 1.50 18.7 -0.47 -0.15 9.5 76 2 1 1 3 2 0 0  
4 1.18 1.26 15.3 -0.89 -0.06 15.0 70 1 1 2 1 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer