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PDBsum entry 1ibm
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Tunnel analysis for: 1ibm calculated with  MOLE 2.0
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PDB id
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1ibm
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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22 tunnels,
coloured by tunnel radius |
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21 tunnels,
coloured by
tunnel radius
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21 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.55 |
1.72 |
52.1 |
-1.24 |
-0.65 |
14.6 |
82 |
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3 |
1 |
2 |
1 |
0 |
0 |
0 |
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G 941 A G 942 A C 1234 A U 1235 A A 1236 A C 1237
A C 1336 A G 1337 A U 1348 A A 1349 A A 1350 A U
1351 A C 1352 A G 1353 A C 1369 A G 1370 A G 1371
A U 1372 A MG 1568 A
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2 |
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1.18 |
1.26 |
57.6 |
-0.72 |
-0.60 |
10.8 |
85 |
5 |
2 |
2 |
3 |
0 |
0 |
0 |
G 1175 A G 1181 A G 1184 A G 1185 A G 1186 A A
1346 A G 1347 A U 1348 A C 1369 A G 1370 A G 1371
A U 1372 A MG 1568 A
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3 |
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1.31 |
1.31 |
59.6 |
-1.14 |
-0.58 |
15.9 |
81 |
5 |
0 |
0 |
1 |
0 |
0 |
0 |
G 942 A U 943 A G 944 A G 1231 A U 1232 A G 1233
A C 1234 A A 1339 A A 1340 A U 1341 A U 1348 A A
1349 A A 1350 A U 1351 A C 1352 A G 1353 A G 1365
A C 1369 A G 1370 A G 1371 A U 1372 A MG 1568 A
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4 |
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1.21 |
1.21 |
62.2 |
-0.36 |
-0.50 |
8.1 |
77 |
6 |
0 |
0 |
2 |
1 |
0 |
0 |
C 1113 A C 1114 A C 1115 A C 1116 A A 1151 A C
1153 A G 1154 A G 1155 A G 1156 A A 1252 A G 1253
A U 1348 A C 1369 A G 1370 A G 1371 A U 1372 A MG
1568 A
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5 |
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1.54 |
1.63 |
63.1 |
-0.55 |
-0.66 |
7.0 |
66 |
2 |
0 |
0 |
1 |
1 |
0 |
0 |
U 1257 A G 1258 A C 1259 A C 1260 A C 1270 A G
1271 A G 1272 A C 1314 A U 1315 A G 1316 A U 1348
A A 1349 A A 1350 A U 1351 A C 1352 A G 1353 A C
1354 A G 1355 A G 1356 A C 1361 A i:A G 1361 A A
1363 A U 1364 A G 1365 A G 1368 A C 1369 A G 1370
A G 1371 A U 1372 A MG 1568 A
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6 |
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1.56 |
1.57 |
64.4 |
-0.91 |
-0.61 |
11.4 |
67 |
4 |
0 |
0 |
1 |
2 |
0 |
0 |
U 1247 A C 1260 A A 1261 A C 1262 A C 1270 A C
1284 A A 1285 A A 1286 A U 1348 A A 1349 A A 1350
A U 1351 A C 1352 A G 1353 A C 1354 A G 1355 A G
1356 A C 1361 A i:A A 1363 A U 1364 A G 1365 A G
1368 A C 1369 A G 1370 A G 1371 A U 1372 A MG
1568 A
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7 |
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1.51 |
1.68 |
64.5 |
-1.05 |
-0.60 |
14.5 |
86 |
5 |
0 |
0 |
1 |
0 |
0 |
0 |
G 942 A U 943 A G 944 A G 945 A A 1229 A C 1230 A
G 1231 A U 1232 A G 1233 A C 1234 A G 1338 A U
1348 A A 1349 A A 1350 A U 1351 A C 1352 A G 1353
A G 1365 A C 1369 A G 1370 A G 1371 A U 1372 A MG
1568 A
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8 |
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1.22 |
1.22 |
65.7 |
-0.28 |
-0.50 |
7.6 |
76 |
5 |
0 |
0 |
2 |
1 |
0 |
0 |
C 1115 A C 1116 A G 1117 A C 1119 A G 1120 A U
1121 A U 1122 A A 1123 A A 1146 A C 1147 A C 1149
A U 1150 A A 1151 A A 1152 A C 1153 A A 1252 A G
1253 A U 1348 A C 1369 A G 1370 A G 1371 A U 1372
A MG 1568 A
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9 |
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1.47 |
1.49 |
66.7 |
-1.26 |
-0.66 |
16.1 |
81 |
6 |
1 |
0 |
1 |
0 |
0 |
0 |
C 1234 A U 1235 A A 1236 A C 1237 A G 1241 A C
1242 A C 1243 A A 1289 A G 1290 A G 1291 A G 1293
A G 1294 A U 1348 A A 1349 A A 1350 A U 1351 A C
1352 A G 1353 A C 1369 A G 1370 A G 1371 A U 1372
A MG 1568 A
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10 |
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1.29 |
1.46 |
68.9 |
-1.51 |
-0.56 |
18.9 |
75 |
7 |
1 |
0 |
1 |
1 |
1 |
0 |
G 933 A A 935 A A 968 A C 972 A U 1062 A C 1063 A
U 1065 A U 1341 A C 1342 A U 1348 A C 1366 A C
1367 A G 1368 A C 1369 A G 1370 A G 1371 A U 1372
A C 1383 A C 1384 A G 1385 A MG 1568 A MG 1638 A
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11 |
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1.50 |
1.62 |
73.4 |
-1.15 |
-0.62 |
14.1 |
75 |
7 |
0 |
0 |
1 |
1 |
0 |
0 |
U 1257 A G 1258 A C 1259 A C 1260 A U 1348 A A
1349 A A 1350 A U 1351 A C 1352 A G 1353 A C 1354
A G 1355 A G 1356 A C 1359 A A 1360 A C 1361 A i:
A G 1361 A A 1363 A U 1364 A G 1365 A G 1368 A C
1369 A G 1370 A G 1371 A U 1372 A MG 1568 A
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12 |
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1.21 |
1.30 |
73.1 |
-0.71 |
-0.50 |
9.8 |
78 |
8 |
0 |
1 |
3 |
2 |
1 |
0 |
C 1115 A C 1116 A G 1117 A C 1119 A G 1120 A U
1148 A C 1149 A U 1150 A A 1151 A A 1152 A C 1153
A A 1179 A A 1252 A G 1253 A U 1348 A C 1369 A G
1370 A G 1371 A U 1372 A MG 1568 A
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13 |
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1.28 |
1.44 |
84.7 |
-1.42 |
-0.59 |
17.9 |
76 |
9 |
1 |
0 |
1 |
1 |
1 |
0 |
C 932 A G 933 A C 934 A A 968 A C 972 A U 1062 A
C 1063 A U 1065 A U 1090 A U 1091 A A 1092 A A
1183 A G 1185 A G 1186 A G 1187 A C 1344 A U 1348
A C 1366 A C 1367 A G 1368 A C 1369 A G 1370 A G
1371 A U 1372 A MG 1568 A MG 1638 A
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14 |
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1.61 |
1.67 |
85.0 |
-0.93 |
-0.66 |
11.0 |
72 |
4 |
0 |
0 |
1 |
1 |
0 |
0 |
A 949 A U 950 A G 953 A G 954 A U 955 A U 956 A U
957 A U 960 A C 962 A G 1224 A A 1225 A C 1226 A
A 1324 A C 1325 A U 1348 A A 1349 A A 1350 A U
1351 A C 1352 A G 1353 A C 1354 A G 1355 A G 1356
A C 1362 A A 1363 A U 1364 A G 1365 A G 1368 A C
1369 A G 1370 A G 1371 A U 1372 A MG 1568 A
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15 |
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1.49 |
1.62 |
87.9 |
-0.99 |
-0.51 |
14.6 |
74 |
8 |
1 |
0 |
3 |
1 |
1 |
0 |
A 1306 A U 1307 A G 1312 A C 1320 A C 1321 A G
1323 A A 1324 A C 1325 A U 1348 A A 1349 A A 1350
A U 1351 A C 1352 A G 1353 A C 1354 A G 1355 A G
1356 A C 1362 A A 1363 A U 1364 A G 1365 A G 1368
A C 1369 A G 1370 A G 1371 A U 1372 A MG 1568 A
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16 |
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1.30 |
1.70 |
15.8 |
0.75 |
0.14 |
9.1 |
76 |
1 |
1 |
1 |
6 |
0 |
0 |
0 |
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17 |
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1.30 |
1.69 |
18.4 |
0.82 |
0.28 |
11.6 |
79 |
1 |
1 |
1 |
9 |
0 |
0 |
0 |
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18 |
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1.38 |
2.50 |
19.3 |
0.48 |
0.21 |
15.1 |
74 |
3 |
2 |
0 |
4 |
1 |
0 |
0 |
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19 |
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1.47 |
1.68 |
20.2 |
0.71 |
0.32 |
13.5 |
77 |
3 |
2 |
0 |
5 |
1 |
0 |
0 |
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20 |
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1.38 |
2.71 |
15.1 |
2.54 |
0.54 |
0.9 |
79 |
0 |
0 |
1 |
8 |
0 |
0 |
0 |
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21 |
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1.19 |
1.19 |
17.1 |
-0.91 |
-0.40 |
8.2 |
72 |
1 |
1 |
0 |
0 |
1 |
0 |
0 |
U 956 A U 957 A U 960 A A 1225 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program