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PDBsum entry 1ib1

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Pore analysis for: 1ib1 calculated with MOLE 2.0 PDB id
1ib1
Pores calculated on whole structure Pores calculated excluding ligands

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9 pores, coloured by radius 24 pores, coloured by radius 24 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.82 2.01 27.5 -1.40 -0.46 24.6 80 3 4 1 3 2 1 0  
2 2.30 3.34 38.8 -2.42 -0.47 31.7 79 7 2 4 2 0 1 0  COT 402 G
3 4.15 4.15 43.6 -2.25 -0.80 13.7 92 3 2 8 1 0 0 0  COT 403 H
4 1.36 3.49 55.2 0.21 0.04 12.5 76 3 2 4 8 3 1 1  COT 402 G
5 1.58 1.86 58.0 -1.52 -0.19 20.5 85 6 4 7 2 1 2 0  
6 1.67 3.01 60.5 -1.91 -0.30 22.6 80 9 4 7 1 3 2 0  COT 402 G
7 1.46 1.72 61.5 0.13 0.06 10.5 76 3 2 3 8 4 1 2  COT 403 H
8 2.10 3.40 66.3 -1.62 -0.33 22.3 85 9 6 5 6 2 1 0  COT 402 G
9 1.99 1.99 66.9 -0.53 -0.04 14.1 78 2 3 5 6 3 1 1  COT 403 H
10 1.41 2.43 82.4 0.11 0.05 10.9 75 4 2 5 10 4 4 1  COT 402 G
11 1.19 2.45 124.0 -0.61 -0.13 15.4 80 10 7 8 13 6 2 1  COT 402 G
12 1.13 1.13 35.5 -1.10 -0.09 20.3 70 4 3 2 4 3 0 0  
13 1.13 1.13 42.3 -0.98 -0.09 16.6 78 5 3 3 6 1 1 0  
14 1.75 4.22 49.7 -1.98 -0.54 24.7 79 5 5 2 2 2 2 0  
15 1.12 1.12 58.2 -1.20 -0.17 19.7 76 4 8 3 6 3 0 0  
16 3.40 4.08 61.0 -2.17 -0.57 23.3 84 5 3 4 1 1 2 0  
17 1.13 1.13 62.3 0.04 0.00 10.7 75 5 3 5 8 4 1 1  COT 401 E
18 1.46 1.71 64.3 0.15 0.09 10.1 75 5 3 4 8 5 2 1  COT 401 E
19 1.45 1.67 65.1 -1.95 -0.30 24.1 80 7 4 4 2 2 2 0  
20 1.97 1.97 65.8 -0.90 -0.13 15.5 77 2 3 5 5 3 1 1  COT 401 E
21 1.50 1.72 84.2 -0.27 -0.03 13.2 74 5 8 5 7 7 1 1  COT 401 E
22 1.15 1.15 93.1 -1.81 -0.43 18.6 85 6 3 8 7 1 0 0  COT 401 E
23 2.15 3.56 95.1 -1.54 -0.26 18.1 85 6 3 7 7 2 1 0  COT 401 E
24 1.65 2.74 115.0 -1.59 -0.31 19.4 82 6 8 8 6 4 0 0  COT 401 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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