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PDBsum entry 1i9z

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Hydrolase PDB id
1i9z
Contents
Protein chain
336 a.a. *
Ligands
2IP
Metals
_CA
Waters ×224
* Residue conservation analysis

References listed in PDB file
Key reference
Title Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-Phosphatase.
Authors Y.Tsujishita, S.Guo, L.E.Stolz, J.D.York, J.H.Hurley.
Ref. Cell, 2001, 105, 379-389. [DOI no: 10.1016/S0092-8674(01)00326-9]
PubMed id 11348594
Abstract
Inositol polyphosphate 5-phosphatases are central to intracellular processes ranging from membrane trafficking to Ca(2+) signaling, and defects in this activity result in the human disease Lowe syndrome. The 1.8 resolution structure of the inositol polyphosphate 5-phosphatase domain of SPsynaptojanin bound to Ca(2+) and inositol (1,4)-bisphosphate reveals a fold and an active site His and Asp pair resembling those of several Mg(2+)-dependent nucleases. Additional loops mediate specific inositol polyphosphate contacts. The 4-phosphate of inositol (1,4)-bisphosphate is misoriented by 4.6 compared to the reactive geometry observed in the apurinic/apyrimidinic endonuclease 1, explaining the dephosphorylation site selectivity of the 5-phosphatases. Based on the structure, a series of mutants are described that exhibit altered substrate specificity providing general determinants for substrate recognition.
Figure 1.
Figure 1. Domain Structures of Representa- tive 5-Phosphatases
Figure 7.
Figure 7. Membrane Docking of SPsynapto- janin-IPP5C
The above figures are reprinted by permission from Cell Press: Cell (2001, 105, 379-389) copyright 2001.
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