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PDBsum entry 1hq1

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Top Page protein dna_rna metals tunnels links
Tunnel analysis for: 1hq1 calculated with MOLE 2.0 PDB id
1hq1
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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0 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.84 1.84 16.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 142 B A 143 B G 144 B G 145 B U 146 B C 147 B A
161 B G 162 B C 163 B A 164 B G 165 B MG 1801 B K
4001 B
2 1.91 1.91 17.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 141 B C 142 B A 143 B G 144 B G 145 B U 146 B C
147 B C 163 B A 164 B G 165 B A 168 B A 169 B G
170 B G 171 B MG 1801 B MG 1802 B K 4001 B
3 1.90 1.90 21.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 144 B G 145 B U 146 B C 147 B A 161 B G 162 B C
163 B A 164 B G 165 B MG 1801 B K 4001 B
4 1.64 1.64 22.6 -0.20 -0.65 3.2 93 0 0 0 1 0 0 0  U 138 B U 139 B C 141 B G 144 B G 145 B A 164 B G
165 B C 166 B C 167 B A 168 B MG 1802 B K 4001 B
5 1.85 1.85 22.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 141 B C 142 B A 143 B G 144 B G 145 B U 146 B C
147 B C 163 B A 164 B G 165 B A 168 B A 169 B G
170 B MG 1801 B MG 1802 B K 4001 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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