PDBsum entry 1h5d Go to PDB code:  Tunnel analysis for: 1h5d calculated with MOLE 2.0 PDB id 1h5d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.86 1.87 25.9 0.19 0.04 8.6 75 2 0 1 4 3 2 0  HEM 350 A 2 1.88 2.16 26.0 0.06 0.18 10.5 73 2 0 1 4 4 2 0  HEM 350 A 3 1.59 1.59 27.5 -0.71 -0.18 15.6 84 3 0 4 6 1 0 0  HEM 350 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.